BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026F09SP1|AL428589
(851 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig536 1250 0.0
>3x_Contig536
Length = 2010
Score = 1250 bits (628), Expect = 0.0
Identities = 696/722 (96%)
Strand = Plus / Minus
Query: 130 acgctatgccactcattcaaagacaatccaataagtttgcattggttaaccttgaacttc 189
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 2010 acgctatgccactcattcaaatacaatccaataattttgcattggttaaccttgaacttc 1951
Query: 190 cacttgactaaattcgcagtgtaaactgaagtgtagatggtagtcccatgagaccaactc 249
||||| ||||||||| || | |||||| || | || || || |||||| | ||||||||
Sbjct: 1950 cactttactaaattctcattttaaacttaattttatattttattcccattataccaactc 1891
Query: 250 tttttcaacccaccataatggtctgcatggaagtgggaaagaaaatataaatcgatattt 309
||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||
Sbjct: 1890 tttttcaacccaccataattgtctgcattgaattgtgaaagaaaatataaatcgatattt 1831
Query: 310 ggttctttatcacaattaamagaatcaaccacaacagttatatcgctgaaacttaatttt 369
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1830 ggttctttatcacaattaaaagaatcaaccacaacagttatatcgctgaaacttaatttt 1771
Query: 370 btgaaccatgccatggactttttccgagaagttttatctacaacagctggctcagattta 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1770 ttgaaccatgccatggactttttccgagaagttttatctacaacagctggctcagattta 1711
Query: 430 ggttgggcctgtccgtgaacctggacttgaacttcaacttcttgtgcctgtgatatcttt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710 ggttgggcctgtccgtgaacctggacttgaacttcaacttcttgtgcctgtgatatcttt 1651
Query: 490 ccctcaattttvacgtcttgactgcccccagcaactggagtttcaggatcgacgctagcc 549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 ccctcaattttaacgtcttgactgcccccagcaactggagtttcaggatcgacgctagcc 1591
Query: 550 tctctttctaaacaactggtgaagtctgcagtaacataatctgtatcagtaccatcatat 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1590 tctctttctaaacaactggtgaagtctgcagtaacataatctgtatcagtaccatcatat 1531
Query: 610 tcatcttcctgagttaagtctatrattkcgttacttgtggtactggtagcaacggacgtt 669
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1530 tcatcttcctgagttaagtctataatttcgttacttgtggtactggtagcaacggacgtt 1471
Query: 670 ttcagacgaacgaacttcaaatcgaacaaagtacgagactgagttctttgaactcttttc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 ttcagacgaacgaacttcaaatcgaacaaagtacgagactgagttctttgaactcttttc 1411
Query: 730 gtaactcgtttcatatcttaggcatcttgatagtcgggcgcgatgctttggaagtagagg 789
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 gtaactcgtgtcatatgttaggcatcttgatagtcgggcgcgatgctttggaagtagagg 1351
Query: 790 ccacagatgacggtggttgcaaattgaactctcttaggataatgtgcgatgagtataatt 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 ccacagatgacggtggttgcaaattgaactctcttaggataatgtgcgatgagtataatt 1291
Query: 850 gc 851
||
Sbjct: 1290 gc 1289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5615
Number of Sequences: 1807
Number of extensions: 5615
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 851
length of database: 10,358,551
effective HSP length: 16
effective length of query: 835
effective length of database: 10,329,639
effective search space: 8625248565
effective search space used: 8625248565
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)